R (VAMP, Ykt6, Sec22) subfamily

Based on the data of KEGG GENES & DGENES Release35.0/+050822 (Aug. 22, 2005 version).


Genomic dataset 'A' (See the main article)

Organism VAMP Ykt6 Sec22 Tomosyn Real SNARE?
apical basolateral/non/? endosomal membranes
VAMP1,2,3
(Synaptobrevin I, II, Cellubrevin)
AtVAMP72 VAMP8
(Endobrevin)
VAMP4 VAMP5
(Myobrevin)
VAMP7
(TI-VAMP)
Nyv1
Tomosyn Amisyn Sec22a,c
ehi
(Entamoeba histolytica)
ehi:191.t00003
ehi:19.t00041
ehi:214.t00017
ehi:32.t00013
ehi:292.t00016
ehi:463.t00006
ehi:64.t00021
ehi:7.t00004
ehi:7.t00006
ehi:31.t00027
ehi:33.t00042
ehi:35.t00015
ehi:81.t00012
tcr
(Trypanosoma cruzi)
tcr:506469.130
tcr:506715.50
tcr:506855.140
tcr:507685.10
tcr:507801.179
tcr:507811.60
tcr:508779.30
tcr:509267.10
tcr:511627.60
tcr:511649.130
tcr:506999.150
tcr:510759.60
tcr:510029.60
tcr:511291.100
tcr:507625.183
tcr:509741.40
tpv
(Theileria parva)
tpv:TP01_0991
tpv:TP02_0923
tpv:TP03_0145
tpv:TP02_0290
dtan
(Theileria annulata)
dtan:TA05360
dtan:TA15855
dtan:TA16720
dtan:TA12350
cho
(Cryptosporidium hominis)
cho:Chro.60028
cho:Chro.60069
cho:Chro.10214
cho:Chro.10215
cpv
(Cryptosporidium parvum)
cpv:cgd6_510
dpyo
(Plasmodium yoelii)
dpyo:1165.m00062
dpyo:145.m00042
dpyo:1158.m00062
dpyo:494.m00028
dpyo:494.m00029
pfa
(Plasmodium falciparum)
pfa:MAL13P1.16
pfa:MAL8P1.21
pfa:MAL13P1.135
pfa:PFI0515w
pfa:MAL3P7.7
ddi
(Dictyostelium discoideum)
ddi:DDB0214903
ddi:DDB0219546
ddi:DDB0169086
ddi:DDB0186275
ddi:DDB0219666
ddi:DDB0219877
ddi:DDB0190688
ddi:DDB0188631
ecu
(Encephalitozoon cuniculi)
ecu:ECU11_0980
ecu:ECU03_0530
cne
(Cryptococcus neoformans JEC21)
cne:CNH03510
cne:CNA02090
cne:CNK00970
cne:CND03150
dncr
(Neurospora crassa)
dncr:NCU00566.2
dncr:NCU06370.2
dncr:NCU08973.2
dncr:NCU06708.2
spo
(Schizosaccharomyces pombe)
spo:SPAC6G9.11
spo:SPBC13G1.11
spo:SPBC2A9.08c
dyli
(Yarrowia lipolytica)
dyli:YALI0A03113g
dyli:YALI0E00594g
dyli:YALI0B04026g
dyli:YALI0E21329g
dyli:YALI0D21956g
dcgr
(Candida glabrata)
dcgr:CAGL0E05258g
dcgr:CAGL0G06358g
dcgr:CAGL0C00429g
dcgr:CAGL0D03498g
dcgr:CAGL0C03179g
cal
(Candida albicans)
cal:orf19.5006.1
cal:orf19.2089
cal:orf19.2974
cal:orf19.479.2
ddha
(Debaryomyces hansenii)
ddha:DEHA0D06160g
ddha:DEHA0G09474
ddha:DEHA0D08822g
ddha:DEHA0F15961g
dkwa
(Kluyveromyces waltii)
dkwa:Kwal_7054
dkwa:Kwal_23743
dkwa:Kwal_17121
dkwa:Kwal_23233
dkla
(Kluyveromyces lactis)
dkla:KLLA0A03883g
dkla:KLLA0F19448g
dkla:KLLA0D02684g
dkla:KLLA0F20251g
ago
(Ashbya gossypii)
ago:ADR355C
ago:AGR054C
ago:AER109W
ago:AGR267W
dsba
(Saccharomyces bayanus)
dsba:191
dsba:16010
dsba:13991
dsba:16839
dsmi
(Saccharomyces mikatae)
dsmi:170
dsmi:20765
dsmi:14734
dsmi:12997
dsmi:15334
dspd
(Saccharomyces paradoxus)
dspd:21496
dspd:321
dspd:14480
dspd:14223
dspd:15833
sce
(Saccharomyces cerevisiae)
sce:YAL030W(SNC1, ysnc1)
sce:YOR327C(SNC2, ysnc2)
sce:YLR093C(NYV1, ynyv1)
sce:YKL196C(YKT6, yykt6)
sce:YLR268W(SEC22, ysec22)
cme
(Cyanidioschyzon merolae)
cme:CMC018C
cme:CMH176C
cme:CML129C
cme:CMF111C
dosa
(Oryza sativa japonica)
dosa:8355.m00861
dosa:8355.m01366
dosa:8356.m04335
dosa:8359.m04243
dosa:8360.m00590
dosa:8360.m05296
dosa:8351.m05374
dosa:8354.m00678
dosa:8362.m00464
dosa:8350.m06077
dosa:8350.m06883
dosa:8350.m01241
dosa:8354.m00887
dosa:8356.m02043
dosa:8360.m05187
dosa:8355.m04724
osa
(Oryza sativa japonica)
osa:P0505D12.21
osa:OSJNBa0061E21.11
ath
(Arabidopsis thaliana)
ath:At1g04750(AtVAMP721, SAR1)
ath:At1g04760(AtVAMP726)
ath:At2g32670(AtVAMP725)
ath:At2g33110(AtVAMP723)
ath:At2g33120(AtVAMP722, VAMP7B)
ath:At3g24890(AtVAMP72 homolog)
ath:At3g54300(AtVAMP727)
ath:At4g15780(AtVAMP724 ,SYBL1 like protein)
ath:At2g25340(AtVAMP712)
ath:At4g32150(AtVAMP711, VAMP7C)
ath:At5g11150(AtVAMP713)
ath:At5g22360(AtVAMP714)
ath:At5g58060(AtYKT61, ATGP1)
ath:At5g58180(AtYKT62, ATGP1-like protein)
ath:At1g11890(AtSEC22)
ath:At5g52270(Sec22 homolog)
ath:At5g05570(Tomosyn homolog)
dcbr
(Caenorhabditis briggsae)
dcbr:CBG18986
dcbr:CBG23459
dcbr:CBG10566
dcbr:CBG22395
dcbr:CBG16665
dcbr:CBG15347
dcbr:CBG08070
cel
(Caenorhabditis elegans)
cel:F23H12.1(wvamp2, SNB-2 protein)
cel:T10H9.4(wvamp1)
cel:B0513.9(VAMP8 homolog)
cel:Y69A2AR.6(VAMP8 homolog)
cel:C30A5.5(wvamp3, Synaptobrevin related protein 5)
cel:T14D7.3(wvamp3b)
cel:ZK795.4
cel:B0361.10(wykt6)
cel:F55A4.1(wsec22b)
dbmo
(Bombyx mori)
dbmo:Bmb000099
dbmo:Bmb020050
dbmo:Bmb023933
dbmo:Bmb018361
dbmo:Bmb002323
dbmo:Bmb020163
daga
(Anopheles gambiae)
daga:21813
daga:24961
daga:9258
daga:11948
daga:21999
daga:16192
daga:25812
daga:26804
daga:27724
daga:4769
ddpo
(Drosophila pseudoobscura)
ddpo:GA11480-PA
ddpo:GA14039-PA
ddpo:GA13531-PA
ddpo:GA20293-PA
dme
(Drosophila melanogaster)
dme:CG12210-PA(fvamp3, Syb, splicing variant)
dme:CG12210-PB(fvamp3, Syb, splicing variant)
dme:CG17248-PA(fvamp2, n-syb, splicing variant)
dme:CG17248-PB(fvamp2, n-syb, splicing variant)
dme:CG17248-PD(fvamp2, n-syb, splicing variant)
dme:CG1599-PA(fvamp7)
dme:CG1515-PA(fykt6)
dme:CG7359-PA(fsec22b)
dme:CG17762-PA(ftomosyn, tomosyn, splicing variant)
dme:CG17762-PC(ftomosyn, tomosyn, splicing variant)
dme:CG17762-PD(ftomosyn, tomosyn, splicing variant)
dcin
(Ciona intestinalis)
dcin:ci0100139417
dcin:ci0100153194
dcin:ci0100130485
dcin:ci0100149181
dcin:ci0100138220
dcin:ci0100144745
dcin:ci0100139341
dcin:ci0100136247
dcin:ci0100137278
dtni
(Tetraodon nigroviridis)
dtni:11402
dtni:11405
dtni:13978
dtni:15329
dtni:20371
dtni:25260
dtni:34899
dtni:3702
dtni:7046
dtni:28616
dtni:12652
dtni:14980
dtni:13469
dtni:23052
dtni:35750
dtni:31997
dtni:23907
dtni:29197
dfru
(Fugu rubripes)
dfru:128571
dfru:138883
dfru:143319
dfru:136502
dfru:153951
dfru:160047
dfru:147094
dfru:167627
dfru:149247
dfru:127019
dfru:160799
dfru:135002
dfru:135006
dfru:135007
dfru:143719
dfru:143720
dfru:143722
dfru:143725
dfru:151325
dfru:151327
dfru:167677
dfru:175445
dfru:175508
dfru:149487
dfru:140669
dre
(Danio rerio)
dre:336281
dre:406707
dre:415163
dre:436805
dre:327007
dre:393236
dre:394067
dre:114464
dre:327277
dre:415153
dre:324832
drno
(Rattus norvegicus)
drno:25081
drno:26012
drno:48364
drno:9586
drno:17301
drno:4208
drno:4243
drno:16984
drno:11065
drno:20693
drno:25327
drno:18806
drno:39502
drno:44583
drno:44738
drno:47133
drno:48415
drno:49322
drno:50312
drno:5618
rno
(Rattus norvegicus)
rno:24803(Vamp2)
rno:25624(Vamp1)
rno:29528(Vamp3)
rno:83730(Vamp8)
rno:364033
rno:89818(Vamp5)
rno:85491(Sybl1, synaptobrevin-like 1)
rno:64351(Ykt6, prenylated SNARE protein)
rno:310710
rno:288080
rno:81022(STXBP5, syntaxin binding protein 5 (tomosyn))
rno:362734
rno:117513
dmmu
(Mus musculus)
dmmu:21273
dmmu:30797
dmmu:32487
dmmu:63466
dmmu:28019
dmmu:51544
dmmu:70335
dmmu:52262
dmmu:2818
dmmu:29476
dmmu:44535
dmmu:52639
dmmu:39568
dmmu:77628
mmu
(Mus musculus)
mmu:22317(Vamp1)
mmu:22318(Vamp2)
mmu:22319(Vamp3)
mmu:22320(Vamp8)
mmu:53330(Vamp4)
mmu:53620
mmu:20955
mmu:436208
mmu:56418(Ykt6-pending, prenylated SNARE protein)
mmu:20333(Sec22L1, SEC22 vesicle trafficking protein-like 1)
mmu:78808
mmu:217517(Stxbp6, syntaxin binding protein 6 (amisyn))
mmu:215474
mmu:317717(Sec22L2, SEC22 vesicle trafficking protein-like 2)
dhsa
(Homo sapiens)
dhsa:314214
dhsa:324623
dhsa:347664
dhsa:354018
dhsa:355122
dhsa:355244
dhsa:54666
dhsa:263864
dhsa:236192
dhsa:305647
dhsa:262640
dhsa:286448
dhsa:348504
dhsa:223369
dhsa:286336
dhsa:179882
dhsa:273666
dhsa:321826
dhsa:302574
dhsa:324302
dhsa:351083
dhsa:264454
dhsa:264464
dhsa:273156
dhsa:310521
hsa
(Homo sapiens)
hsa:6843
hsa:6844(VAMP2 (synaptobrevin 2), mvamp2)
hsa:9341(VAMP3 (cellubrevin), mvamp3)
hsa:8673(VAMP8 (endobrevin), mvamp8)
hsa:8674(VAMP4, mvamp4)
hsa:10791(VAMP5, vesicle-associated membrane protein 5 (myobrevin), mvamp5)
hsa:6845(VAMP7, SYBL1, synaptobrevin-like 1, mvamp7)
hsa:10652(YKT6, SNARE protein Ykt6, mykt6)
hsa:442272
hsa:9554(Sec22b, SEC22L1, SEC22 vesicle trafficking protein-like 1, msec22b)
hsa:134957(STXBP5, syntaxin binding protein 5 (tomosyn), mtomosyn)
hsa:9515
hsa:29091(STXBP6, syntaxin binding protein 6 (amisyn))
hsa:26984(SEC22L2, SEC22 vesicle trafficking protein-like 2, msec22a)
hsa:9117



Genomic dataset 'B' (See the main article)

Organism VAMP Ykt6 Sec22 Tomosyn Real SNARE?
apical basolateral/non/? endosomal membranes
VAMP1,2,3
(Synaptobrevin I, II, Cellubrevin)
AtVAMP72 VAMP8
(Endobrevin)
VAMP4 VAMP5
(Myobrevin)
VAMP7
(TI-VAMP)
Nyv1
Tomosyn Amisyn Sec22a,c
dgla
(Giardia lamblia)
dgla:EAA40076.1
dgla:EAA39954.1
dgla:EAA41174.1
dcnb
(Cryptococcus neoformans B-3501A)
dcnb:CNBI3260
dcnb:CNBA1990
dcnb:CNBK2530
dcnb:CNBD3200
dmgr
(Magnaporthe grisea)
dmgr:MG01681.4
dmgr:MG06125.4
dmgr:MG04050.4
dame
(Apis mellifera)
dame:25177
dame:28998
dame:30593
dame:31525
dame:35358
dame:4263
dame:4264
dame:4266
dame:6574
dame:29936
dame:19623
dame:31685
dame:2228
dame:2229
dame:2230
dame:2231
dxtr
(Xenopus tropicalis)
dxtr:10986
dxtr:11007
dxtr:11008
dxtr:18103
dxtr:19954
dxtr:22918
dxtr:2718
dxtr:21845
dxtr:21846
dxtr:21847
dxtr:21848
dxtr:27017
dxtr:27019
dxtr:27021
dxtr:27023
dxtr:27024
dxtr:27025
dxtr:27026
dxtr:27027
dxtr:13554
dxtr:13555
dxtr:13556
dxtr:39085
dgga
(Gallus gallus)
dgga:23265
dgga:808
dgga:8830
dgga:5156
dgga:21405
dgga:4591
dgga:20128
dgga:20129
dgga:20130
dgga:20131
dgga:20132
dgga:24055
dgga:24056
dgga:24057
dgga:24058
dgga:15991
dgga:19095
dgga:19096
dgga:19097
dgga:8440
dcfa
(Canis familiaris)
dcfa:22317
dcfa:25031
dcfa:29085
dcfa:11416
dcfa:13179
dcfa:13338
dcfa:21980
dcfa:11409
dcfa:7731
dcfa:4299
dcfa:4306
dcfa:15809
dcfa:507
dcfa:509
dcfa:510
dcfa:513
dcfa:515
dcfa:18362
dcfa:17765
dcfa:17768
dcfa:7886
dcfa:7888
dcfa:7890
dptr
(Pan troglodytes)
dptr:14872
dptr:191
dptr:39329
dptr:45451
dptr:46918
dptr:47006
dptr:7819
dptr:20817
dptr:2799
dptr:20818
dptr:32693
dptr:2037
dptr:31892
dptr:31893
dptr:10568
dptr:10569
dptr:39705
dptr:26380
dptr:26381